NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137326_1098450

Scaffold Ga0137326_1098450


Overview

Basic Information
Taxon OID3300011417 Open in IMG/M
Scaffold IDGa0137326_1098450 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)668
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8896Long. (o)-106.9085Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077067Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0137326_10984501F077067N/AMTDKLLISATPCGLGVSAMPLVRSMPRLIVLAVAAVLPAACAAPEPPNPFAGAWTTAEHQQIAFRDNTVVVNAKDKAATPMAAESCDGAFRFGYGRKSREALLGLTPQQPDLRKKLSSLLVQPEYPVAELACGDGGSTYVLLGDRELVAIYRDRDIAGVERLSRL*

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