NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153933_1004267

Scaffold Ga0153933_1004267


Overview

Basic Information
Taxon OID3300011411 Open in IMG/M
Scaffold IDGa0153933_1004267 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3853
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.778Long. (o)-74.6307Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052224Metagenome143N
F064606Metagenome128N
F083133Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0153933_10042672F052224GAGMERIIHPNDNAREAKAAIWFFEGSSLYVLIAAFALALAAFRYCYDGLGLGTWGSVVAGAAPLVAAMVYVLTLKLGKPKSYDIDFFRSSGVRLIRAVAGTGLVLVRFELHGSGARKTRHPYAE*
Ga0153933_10042673F064606N/AMYSLVAKHLMLFSFKPHLAALMFIAAGSISQALGQAGGIINGFALIGAFGGLVFAGWQAKMGRTEMIKYGLLGSALCGLAWAIVSAMFSAGGQSVSIQLQSPN*
Ga0153933_10042675F083133AGGMSICDTCLIHGFSICVILTMAKTPFYTVRQPGLSRLSLQDGPAWRAFCYHDIRAYTLDSDLLILHHTDCIIALRGLNLRQLYLSLLVEEVYEIPLHTAQIPPSECAVTEISIQQISTDD*
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