Scaffold Ga0137440_1014758

Overview

Basic Information

• Taxon OID: 3300011410
• Scaffold ID: Ga0137440_1014758
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034837	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137440_10147583	F034837	N/A	VLVSVLLASAPAFAQGLPGGRPPDAIDRARGLATQPFGTLPAPGRPTERYVPPSRVYSPAQGRAVLVPGHYERDVNGQRVEVPPLVTTTPDGRNPVVVPGGERPPLEQRGAP*