NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153951_1019499

Scaffold Ga0153951_1019499


Overview

Basic Information
Taxon OID3300011404 Open in IMG/M
Scaffold IDGa0153951_1019499 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1157
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.7458Long. (o)-74.7615Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005805Metagenome389Y
F053688Metagenome140Y
F102229Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0153951_10194993F005805AGGAGMIAILQQQVNTMLLQQQESRVEVARPQVFSGRIEEVSAFINAAHLYIRMKMTEEAAAT*
Ga0153951_10194994F102229AGGAMVRSCSSLVWGGGRILKGVPPIAVIVGETLVMAMAMAIVMVMFPHKRMNGLLRLYL*
Ga0153951_10194995F053688GGAMSFVQVIYPLSLTDSEVPFIARVCYPRGLRALCSLVRKSV

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