Scaffold Ga0137313_1000040

Overview

Basic Information

• Taxon OID: 3300011403
• Scaffold ID: Ga0137313_1000040
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43513
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8896
  • Long. (^o): -106.9084
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054114	Metagenome	140	Y
F062895	Metagenome / Metatranscriptome	130	Y
F094595	Metagenome	106	Y
F098309	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137313_100004017	F094595	GAGG	MATSPIRSATSSSAKKQVNRAPQKRTFHFFVRVTDEAGNVIPGAKLTVDRIMSDARKVVEFLDTPEYANSGLTRIKHEVIANKRGEESDGATSVG*
Ga0137313_100004035	F054114	AGGAG	MSSEPTPVVSFENKPSQTQQAFSMDQKQKAVPAYIVEPMKRKTVVNRTVKDEIGFRVVPTDVEIEGYMVRTLRGDSVFVTHEDLVRLKLDKNLVPLFMDGGDDTPVGMQQANAALSTKQKQSLDAITQLLDKDPDLLNKLLAASEQSDKEE*
Ga0137313_100004042	F062895	AGAAG	MPDLPLANGLVIDTATGQAMLPSTSPEAVIQQQTKRTKQTTQEATVRGRDRNNRAVRRGLVDLPADSKAITTAGIVWLYFNLGINDAEIAEATGLKISQVDMIKGLQLFGQLDHLIKDNIAALQADSVQKRIDSLSADALNTLEDMMEHEDTRPATKARIAMNMLDRGGFSPKQVMEHRHSMEGGLVIRHIREIAQPKHMPTVDIDARDITSQVVEK*
Ga0137313_100004045	F098309	GGAG	MPAWQGGWNNVFGAPHALINQATATMRSVARLTNSVGGQHFGEVARALANGVGANTDLSIKQVQAVQADGLNLGGVRPIATYVVVPLHATTITEKEAFQAQMTPTWAPNPYPVEKSGNSGGGFLNTVNK*