Scaffold Ga0153984_1027864

Overview

Basic Information

• Taxon OID: 3300011401
• Scaffold ID: Ga0153984_1027864
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1243
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, Alexander Wildlife Management Area
• Coordinates
  • Lat. (^o): 33.0108
  • Long. (^o): -81.8997

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015042	Metagenome	257	Y
F086400	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153984_10278641	F015042	N/A	MSCQSAAPSSGSNSIPLADRTISHFTSGLPRRSRRLQLGTPRTLVRPRSFPPSVEPSEFHGVDPATISHIDDDLDWVDAPIPVPTPVFQTPPVADHNPINNQLAEAL*
Ga0153984_10278643	F086400	GAG	LQEGGVLSYPTLFLVVTVYCLLLRIAETISFAISFPVVIVEGDCQLIHGMEGGGFSLFLVCYQILKAIWQSLVKAMA*