Scaffold Ga0153984_1007654

Overview

Basic Information

• Taxon OID: 3300011401
• Scaffold ID: Ga0153984_1007654
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, Alexander Wildlife Management Area
• Coordinates
  • Lat. (^o): 33.0108
  • Long. (^o): -81.8997

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F058578	Metagenome	134	Y
F093005	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153984_10076543	F058578	AGGA	MIQKEQVSRKRMETRALNVCQSEPPPEYAEDSEEDKIPIRTHEAEYEQGDRLFMIRILLESTVEDLRAASTTSQKLAEGAHQSVEAWREPFILPNCVRGFESVFAEEDFDILPEHRQ*
Ga0153984_10076544	F000383	N/A	VASFISRRALVHLYFSGLPIDLWVVVLEPGITEDHVLPSEARDSKERPFRVGFVTEDYIYYFGDLTCLVGGAIHIVYQYGVRDALGINTFHTDEVSIYEVARSSGVQKCLDGMHLTGVCGADFYWKDD*
Ga0153984_10076545	F093005	GAG	VKDCPHCLDIWRLTTEQREELIEDLMALKDAVEEEEVCLAPEKDFA*