Scaffold Ga0153984_1005441

Overview

Basic Information

• Taxon OID: 3300011401
• Scaffold ID: Ga0153984_1005441
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2770
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, Alexander Wildlife Management Area
• Coordinates
  • Lat. (^o): 33.0108
  • Long. (^o): -81.8997

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018491	Metagenome	234	Y
F061419	Metagenome	131	Y
F070727	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153984_10054413	F018491	GAG	MRNYLQHTEKRNQVRYLWRLRGLDRWAILRREGKGIRVLLQELDKVLDSWY*
Ga0153984_10054414	F061419	N/A	LLSSLTLLLQLGKQLTLLFTQARPTPLLSSKPLGASLPITLIAPFTSGTALARRSGPFTFWYMKTLPVPRLLLDAIQPLHLTLFDPRVPLSASMHGEHPLLVLHLRVITSSLSKVVSRTFSSPPMLKVGAGFHLLASQSPCVPGRLEPFLTMLLLGSSDSAFSLQSAPIVRVAIARWKHIDTSLSTAAGLPTFP*
Ga0153984_10054415	F070727	N/A	SSPKTGSLGQLLEMEMNRNETCQSLNSTSWRSAKSTQNPESSLALHGCQKRDLCLSRSSREIPESEAISGDRNNTGLIEKLLL*