NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137312_1000009

Scaffold Ga0137312_1000009


Overview

Basic Information
Taxon OID3300011400 Open in IMG/M
Scaffold IDGa0137312_1000009 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42024
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (80.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8897Long. (o)-106.908Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041752Metagenome / Metatranscriptome159Y
F060877Metagenome / Metatranscriptome132Y
F068279Metagenome125Y
F083401Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0137312_100000943F060877GGAGMSRRSKRAVEAALVEAPVEAAVAVEPVAVHPEVEADNAKKNSVVKTLYKRRYAARAVEAGNKRKAAQRSAWDWLAQTIAGECLGAKDRLDVERFLALLDANGVDHSRWTNRSKGWEGRLRMTGRLALQRVVAEAGVLKTPDGEELEAPAEWVAKHAH*
Ga0137312_100000957F083401GGAGMAEKRVVYRDDGAVKRTLIVDDDVPDLVHVVTEQDLTRAVENNHLLRELHPKRSTNKLLARGVPIAVAEKAILENWDEQDWARWLDDPDNAAFRVWPGRVGR*
Ga0137312_100000958F068279GGCGGMTTFLSDKCQEIRNWLALGAEVYPDPVITGWIRMAEEYLSTALRVKHMIQIDTCDLVESRAPLPLDWQEIRLVRRLDTGGILRYQTPDGFFNPEYLDPPASPYPGQQGKYCILGNYIVVGGVCFPPSTKVELTYYQNVPPLTNEVNNWPNMYHTTVYTLKILHVASLYAIEDDRGPMWDQEVVRMVNGMNLQHKMDMASGSVLTQTRCKSFG*
Ga0137312_10000099F041752AGGAGMSDETQTPAETPAEQKTTKSIVPSKYSGRYKNGGEGPLAEFIKTQCTHESVFSFDRFFDLCLKNGLPQDKVDHYRGQVAEKRHGAEGRTRMTLRNMLATIARKNGKLTGLDGEEVEIDLPKTVLTGAAAKAAANKQAAA*
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