Scaffold Ga0153960_1001566

Overview

Basic Information

• Taxon OID: 3300011396
• Scaffold ID: Ga0153960_1001566
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5182
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5713
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006376	Metagenome	374	Y
F080719	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153960_100156610	F006376	N/A	VIGGAFQSIDYVCFHVNWEEVNPELLLEVSPGSDRENASVRFLTKHVFGPLGSTTTFKERESPKNPLFFVVELFWGQMDVQGAGV*
Ga0153960_10015669	F080719	GAG	MNVHQLTTEQQEELIEDLLALKDVVPTEESCPPEEEEDFA*