Scaffold Ga0153960_1000407

Overview

Basic Information

• Taxon OID: 3300011396
• Scaffold ID: Ga0153960_1000407
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9136
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5713
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000591	Metagenome	1003	Y
F029615	Metagenome	187	Y
F039422	Metagenome	163	Y
F057023	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153960_10004071	F000591	N/A	MSRSNGLGVKDIVELCASDMSQSSRVFAMELCCEFWYGDFGSGLPGIVFVAVFFPLNEVLESSLVPTTVEYFLYFSLRFSIDNYGQWVVLHRASCNWVVRGRSKLHYVEHWMKLLYLAWQS*
Ga0153960_100040710	F029615	N/A	MRTSIDGAVGRGFGMTRGDRARGNLAVDNGRSQAETVLSDAEEAEHDMD*
Ga0153960_100040711	F057023	AGGA	VQPELLFKFSLDLDRKNTSVRFLMEYIFGPLSNMTSLKEHEGPEDLFLFIMELLWG*
Ga0153960_10004079	F039422	AGGA	VRVQVFIPFERTKSLSMRLPVALQSRRASTEWSLLVSVVPISTGRSREVPHVSRVLIEKSLGSLFSYLGLRSRAKTRGIEGSASTSSLSIVFRSSIVNTVNLFTGDRGALIAGHAMQNPLPLGNKTLLSELHLSTPTDLQSTPPTALW*