Scaffold Ga0153960_1000221

Overview

Basic Information

• Taxon OID: 3300011396
• Scaffold ID: Ga0153960_1000221
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12148
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5713
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001585	Metagenome	667	Y
F019262	Metagenome	230	Y
F029615	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153960_100022112	F029615	AGCAG	MGTSIDRVVGRGFGITGGGRARGNLATDNSGGWTEMVLSEAEGAERDTNWKVSFARRT*
Ga0153960_10002212	F019262	N/A	MLQLIFRRFLRELDKAPGGNNLQYILKCPCIPFFGNQGLHNEIMLGGNGGCSRVMCEGSPYIYLPSKVAASRSNSSGIENGIEVSLADVSWGGWVLPIVLCNEVWCLDIGSYLLRVVFSAKTLSLDQELESPPVPVTI*
Ga0153960_10002214	F001585	N/A	VVGDNMLQEAVELPDVVKKESGCSFCCDHCVRWNEVYSLGDGVYYSHDGIMSGGLREFDHKIDTECIPPCVRNGEQLKFANRRVSPGFRPEAEITGAHILTDIPRYLRPPVVLGHQF*