Scaffold Ga0153970_1007286

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1007286
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2232
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006878	Metagenome	362	Y
F008009	Metagenome	340	Y
F017770	Metagenome	238	Y
F018491	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10072862	F008009	AGGAGG	MTKSVKSVELKLASVPIRAVTGMERDVVRKVVQQPTSWAYLRVE*
Ga0153970_10072864	F017770	AGTAG	MTSSSDLGTGSVFMCQEVKGPLSLAWAVPEVDGAIRVISEEIPKSLDNGKGVGLA*
Ga0153970_10072865	F006878	AGG	MGKPAAVGKDVSTCFHLAIATQTLGALCREKALSELPNRSMIKDGLSCPGTQGDRLANKWKPAPTFSIGGLEKVLDTTFEREKVTTLR*
Ga0153970_10072866	F018491	GAG	MKLRAVRLRNYLQHKEKRNQVRHSWRLRGLREWAILRREGKGTRVLLQELDKILDSWY*