Scaffold Ga0153970_1005888

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1005888
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2537
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004107	Metagenome	452	Y
F015423	Metagenome	254	Y
F022328	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10058882	F004107	AGG	LELNRDVSDRMNCRGLSAGENRGFTKVSTGGTEAELWSKNGGQKDIDPETQSINGL*
Ga0153970_10058883	F015423	AGAAG	MHSPEGNFTGNDTTSEIILFEVPSNRHSSTGGVEVVGRERPRAKAESKKQCIDPESTSVRMDIGWRWSRAHTRGETRGIQREFRSERADVLKRIGLAVAQTSSMRLLVCAESWEPRSSFPRGSQRVESLVPPE*
Ga0153970_10058884	F022328	GAGG	VDGDGDLVMEDGRLEGFRELWDGTVCGGVVDDWGQDEAELCEEVEY*