Scaffold Ga0153970_1003306

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1003306
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3561
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002648	Metagenome	539	Y
F035142	Metagenome	172	Y
F057804	Metagenome	135	Y
F088011	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10033061	F035142	N/A	MFGQLLKMVLQVAQGVSDGWGGVCREQHLSWSGVIRELEFVSGGRLEGSCPLRNSGALARRSNSAVRATEGDSRRFLS*
Ga0153970_10033062	F002648	AGGA	MPVSASWRKRFSDHFAARLSLKKARVQKIFSSSQMNCSGARHKYSVQELRKAHPELRLPEKSGGEGSFGLVRCLDRAAGTGEGELTGGRETVGTRAVMS*
Ga0153970_10033063	F057804	GGA	MSMSTPPDSAGRGGGGLGGMESRAAGEERSTEKGVGRARAEHAGVTVVDQSVDWNALFANHAWSILRAAAYQASGSVSAGRPKSIVAI*
Ga0153970_10033064	F088011	GAGG	VKDCSHRLDVQRLTAEQREELIEDLMALKDAVEEEEVCSAPEEGFV*