Scaffold Ga0153970_1002721

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1002721
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3970
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019262	Metagenome	230	Y
F049332	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10027212	F049332	AGAAG	METRALNICWSGPSLEYAEDSEEDEAPIQTHEAEYEPRDRLFITRILLESTVEDLHAASTTSQKLAEGAHQSTKV*
Ga0153970_10027218	F019262	N/A	LQLTSRRFLRELDKAPGGNNLQYILKCPCIPFFGNQGLHNEIALGGNRGHSGVMCERSSYIYPLSKVAASQSNGSGIENGIEVCLADVSWGSWVLPIVLCNEVWCLDIEGYLPRVVFLAKTLLLDQELEPPLVLVTI*