Scaffold Ga0153970_1000332

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1000332
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10149
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F023497	Metagenome	209	Y
F050060	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_100033213	F023497	GAG	MDMNRGRGGDRMCYVCGKWGHIAKNYWERHKRRVVEMPQELAKDNRGQ*
Ga0153970_10003322	F000523	N/A	VIAKPERRLWQTVKDVGAENDLLNDLGFNLCVAPQSPVMGLVTYFRVVEVVKTEVLSRQVEESEI*
Ga0153970_10003327	F050060	GAG	LADFITKLPLAQGYDTILVVVCDCFSKMAHFIATTEKTLAEGLTKLF*