Scaffold Ga0153970_1000252

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1000252
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11195
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023497	Metagenome	209	Y
F055328	Metagenome	138	Y
F091123	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_100025214	F023497	GAG	MDVDRGRGGDRTYYVCGKWGHMAKNYWERHKRRVVEMPQESAKDNGGQ*
Ga0153970_10002522	F091123	N/A	MVYVELTIPKPSVWSMENVVNAFLRSIEREQIGLRTVIHYMLGLTMTWFLKAMGPDSPINMWSLTVLNFFFSLIIISILRSLLDWELSSI*
Ga0153970_10002523	F055328	N/A	MMRVLNIILRMKKDEQVDMGKISLLELNSVDISYSSTKEAIINELEKCFLLLLKDL*