Scaffold Ga0153970_1000137

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1000137
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13421
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017769	Metagenome	238	Y
F029617	Metagenome	187	Y
F074228	Metagenome	119	Y
F098375	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10001371	F029617	N/A	MFPDLPMEKVLAMHQSGFGASASPNRGDAVHSGASRASKMTTHGPTRHQVLIPLDTPTTEVVVANAVTAVESCNRGLVEAHSKLRVESVHKAWDRISMSTNFVASAAELEVIKQWLKKVAGLAASTVVEP
Ga0153970_100013713	F074228	GAG	VTHMEVRDFSVRLGSDICISRVENPMGTLSSSLCQMLNKEQLA*
Ga0153970_10001372	F098375	GGAG	VDWGFLLRAAWAKDLGACLGTWGLVATFAGVGLAVAVLAGEGGGGALNTTGVGVGTFWEGVERLVEGETLPLPLLFLLVTVVKGASSTAG*
Ga0153970_10001375	F017769	N/A	MCSLFRNRGRGSSRELERGNFMRELTCNDPRGSRYSETRANLLLFTFLFLRGRKELRRCIPRDLSS*