Scaffold Ga0153970_1000098

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1000098
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14669
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003619	Metagenome	476	Y
F018112	Metagenome	236	Y
F074229	Metagenome	119	Y
F078054	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_100009815	F018112	AGAAG	MYSLEGNFTSNNTISEIILFEVLSNKHSSTGGVGVVDRECPQAKAESKKQYVDPESTSIQMGIGWRWSKAYTSGETRGIQRELGSERADALRCIRLVVAQTSSM*
Ga0153970_100009817	F078054	GAG	VTESTLWNSKGSTRGKNNQECTRVQGVPEWRHLDLLGRPEVKRPIVQSARGIELLLEEGAVNWQDIRKKTQQKPV*
Ga0153970_10000987	F074229	GAG	VKARAKEALPINLHPEKYIRILQMLETQLKGNRKENSPFYHSPSHLSSMTPPCSHNSHYLPVFHTS*
Ga0153970_10000988	F003619	GAGG	VNVSYHIPYSFLSQDTAVTWTTFYGVAGLKILANHQLRLYHTHKIWCGGTDEGLIECSKAHEWFTDYSTSELVTVCKCGHYARQI*