Scaffold Ga0153970_1000004

Overview

Basic Information

• Taxon OID: 3300011394
• Scaffold ID: Ga0153970_1000004
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26975
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (42.42%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5455
  • Long. (^o): -82.1221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F006376	Metagenome	374	Y
F019419	Metagenome	229	Y
F025893	Metagenome	199	Y
F051605	Metagenome	143	Y
F080720	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_100000415	F025893	GAG	MDVRQLTTEQWEELIEDLLALKDAVLIVEACPPKEKDFV*
Ga0153970_100000416	F019419	AGTAG	MGTPIDEVVGGGFRVTRGGGARGNLAMDNGEGRAETVLSDVEGAERNTDWKASFARCTWSILYAALYHTSGSVSAGHP*
Ga0153970_100000418	F051605	N/A	MMRLLISSDNCVLGFLDAETIDSLLDNVVVDLVSGGGGDGRIKITSSLSLFSFGRIISLTHGREVN*
Ga0153970_100000419	F080720	GAG	MSSFTNTTTNASTMAVSLTWNQEIYNKIICCNNRTKDWASKMDCIIQAIEAMAGLEEKAEKLVRMADIINNTMADTETGTLLAGEGYCTDIATQFYEVAKTLRLILHDILSQ*
Ga0153970_100000429	F006376	N/A	VIGAFQSIDYVRFHVNWEKVNLELLLKVSPGLDEENASVHFLMKYVFRPLGDMTTFEECESPKNSLFFIMELFRGQVDV*
Ga0153970_100000431	F025893	N/A	MDVCQLTTEQQEELVEDLLTLKDIVPIEESCFPEEEEDFA*
Ga0153970_10000049	F000383	N/A	MVFFTLRRASVHLHFSSLPIDLQVMVLKPGITKDHVLPSEAENSEEPPFGVGFVTENHVYHFRDLICLVGGAVHVVHWYGAKDALGVNTFCLDEVLIYEVARSSRVQKHLDGIYLAGICGADFYWKDD*