Scaffold Ga0154002_1000113

Overview

Basic Information

• Taxon OID: 3300011393
• Scaffold ID: Ga0154002_1000113
• Source Dataset Name: Attine ant fungus gardens microbial communities from New York, USA - TSNY086 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19331
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (58.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New York, Robert Cushman Murphy County Park
• Coordinates
  • Lat. (^o): 40.8926
  • Long. (^o): -72.8224

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000950	Metagenome	822	Y
F008983	Metagenome	324	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154002_100011313	F000488	N/A	MPTIRNTKTLAECPLLKKKSATKKLLLKRIEMEPTLSTKLYNRFVEADPCWHKVDDFYFASCPPELHFHKTKKLLCIKEYKELLKPILDCISLFFTKMSENKTWAEDLQYDSLWK*
Ga0154002_100011315	F008983	N/A	MQAYKALYLNKAQGAIFGPEAIGEKSRGKKNPGIMEINEIQGKEEKSL*
Ga0154002_100011316	F000950	GAG	MLEEDSDDLDFPLEDVKINSASIEEIPDSVPSSGKGKRTPKLDFFLGL*