Scaffold Ga0154002_1000040

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154002_1000040

Scaffold Ga0154002_1000040

Overview

Basic Information
Taxon OID	3300011393 Open in IMG/M
Scaffold ID	Ga0154002_1000040 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New York, USA - TSNY086 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27403
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (46.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New York, Robert Cushman Murphy County Park
Coordinates	Lat. (^o)	40.8926	Long. (^o)	-72.8224	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091124	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154002_10000408	F091124	AGG	MLLSAVLVSEDDKRVSKNKDVEAARCRVNDGYQVLMLSIGSECP*

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