Scaffold Ga0102688_1685946

Overview

Basic Information

• Taxon OID: 3300011381
• Scaffold ID: Ga0102688_1685946
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1117
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003543	Metagenome / Metatranscriptome	480	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102688_16859461	F003543	AGGAG	MADETISTRIVANADFSALIADVHRVTASLSKLQQELASSNKMLANQIAVMNRSFSDTLRSTGQYSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFRDQARTSGGLIRDLAKQQVALQNAVLQPLGRNAQGLMQFNVHVPRGLD
Ga0102688_16859462	F005479	N/A	MPELIATLKALKKKEHEERKFFASLKGVDLGEYEDDTKEGSSFEEIELRAAGIHANPNDVVSLQGRFAAQAGFGIGEGLGYVKE*