Scaffold Ga0153936_103484

Overview

Basic Information

• Taxon OID: 3300011380
• Scaffold ID: Ga0153936_103484
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ020 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3451
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Wharton State Forest
• Coordinates
  • Lat. (^o): 39.7782
  • Long. (^o): -74.6305

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005805	Metagenome	389	Y
F058580	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153936_1034841	F058580	GAG	VFTTESILAIPDIDREMRVKANTSDYATGRVLSTKCED
Ga0153936_1034846	F005805	AGGAG	MITNLQQQVNTMLLQQQGSRVEVARPQVFSGKMEEVSIFVNTAYLYIRMKMTKEAATTQVAWVLSYV*