Scaffold Ga0151652_13831717

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151652_13831717

Scaffold Ga0151652_13831717

Overview

Basic Information
Taxon OID	3300011340 Open in IMG/M
Scaffold ID	Ga0151652_13831717 Open in IMG/M
Source Dataset Name	Combined Assembly of Wetland Metatranscriptomes
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	535
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Twitchell Island, Sacramento and San Joaquin Delta, California, USA
Coordinates	Lat. (^o)	38.107	Long. (^o)	-121.6475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094064	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151652_138317171	F094064	N/A	WYDAVAQRYGHQVARDLDKEVWLRNIPPTALRTLQALGHEAKDMAAILKVTQFHPAAGGCPYLYDYEVELKSPTVGIVKVTRCKAMRVYRDKGDMEFVRVMCRDWDIPMFGITGKSVIPNVKCRPLVIPPYDAPYNKKVEGVDCMWEYTLEPEKVKAKTAKKGKSNR*

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