NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_11390

Scaffold Ga0153700_11390


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_11390 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10154
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002644Metagenome / Metatranscriptome540Y
F011486Metagenome290Y
F011830Metagenome / Metatranscriptome286Y
F064652Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_113901F011830N/ANYACISTLEAQEIALGESIAVSVLASPFSGTFTVLALPQYLFTGVDGETGEFLYNTNVAVPNQILYACTGSDVEFVADYSGVVTYLQTCTWITATDIEDWIGIGTATAGDTTFLTICAAASNAFCYRRRQEVGYADSLTVVPSQDVKLATVMYGGALYRQRGSITDFASFDGMSTGSTNGLSPLVKQLLGVDRPQVA*
Ga0153700_1139012F011486N/AMTKPYVVTKQPVVTSALAGMNKWVELACKHSDGSLWNNGTFVNRDVRGKPGVISNHARGLAADLSYRWQAQQKRGRQDGRKISLAYMNKFLENADTLGIQLVIDYALTRSWKCDRGTWQAGKFETGDWWHVEVEPRLAHDPEAVKRAFSAVFGPSPKAAPQSV*
Ga0153700_1139014F002644N/ALRNSNGNIGGTMTENIDPRTDPQFKALMQVMNEITGNKVPLMQPHELAARSTLRALQHIIDDSNALDDSDLIDTCNQARIEIRYLCSIITDLHERIKQRDIEIGIKQLRLNENEVEIQRLENMVHRAY*
Ga0153700_113903F064652AGGAMANYLVTSTRLAGFKPGDVVTSADLEGVNIEALIEGGHISTQTAKKSAKTKDTNEKE*
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