Scaffold Ga0153700_11362

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11362
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10293
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F044967	Metagenome	153	N
F051684	Metagenome	143	N
F096618	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1136211	F044967	GAG	MKKRNWPNTNGGTPMEIEMIEKTKDRFDLEQEILQCWNITDDIKNYVAEGATSEEFSALAQYYERKFDRLWNTFESMIHERKM*
Ga0153700_1136213	F051684	AGGA	MYAWIIKHQDVISGFVSGVSLMVAADYFARGDMTYGSLSLFVSVANLLLSGKKMGQHGQPN*
Ga0153700_1136215	F001957	AGGAG	MNSVDMANNLIFRARHLQEFVVTTELPDDFGFRGVIPFDMQITGNILEARVWAVDFNEAVDRLNEFLQNDD*
Ga0153700_113626	F096618	AGGAG	MSRMSELDLDIQYLLEKGRTAMDIARELEIPVSWVYEKPKAVEEPQEVLSPFATINS*