Scaffold Ga0153700_11347

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11347
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10370
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F015965	Metagenome	250	Y
F024254	Metagenome	206	Y
F031360	Metagenome	182	Y
F089863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1134713	F000340	AGG	MNWADVLKAVIPVIVASLAWLLGQVSDFSVRLTKIEGAMPALITKEGVPTDSPISAERRHLMKEEIYRDIHQLQVKVQLLEEREKMVKK*
Ga0153700_1134715	F031360	GGAG	MNEVKLSTQLVNAILQYLGTRPYTEVFQVIEAIQKEAKEQAKPEVQAE*
Ga0153700_113474	F015965	AGG	MLVDSKKKQLSQEAIVMIAAQETKSPHPASTIYAALVQEMNMEGTSIVRDGNTLFIIHNAEGRVGVFRALNADTARNYLENSYAFIQAAYKMGFDVLVSEFEDPTIMNIFKAISRNPPQEGMGYRAEKTNNGFRVTVKLGPKRAERE*
Ga0153700_113476	F024254	AGGA	MNFLEIFNYVAKVARPAHAAIAKATSMEDTFQDIGLDSLDGLVMLMYFDELYGIADEVSKEWTPASVQELHDLVMASKTKEPVSMEEVAEVCK*
Ga0153700_113477	F089863	GGA	MCEAYAAQQLSANTPEEEWKQWAAGLKAIDVFTNEGIPGPYIYENWQDWASALVGAVNQPTQETAT*