Scaffold Ga0153700_11323

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11323
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10474
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F029440	Metagenome	188	N
F078699	Metagenome	116	Y
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1132310	F084222	AGGA	MSKELYLSRLALEIEKHEERGNVRKAQELHNYFLKVANIRDMDPEAFADDYREEQDLMPVLNEEYYGEYQDNPDEDIVDDSLGSDMYDHDVNEFKNDTSSNAMNLINSLREELQHNDLALKILDILEEELG*
Ga0153700_1132312	F078699	GAGG	MKVNFRVAGTMEIPDDAILHEDILNQLYALEFNNKMYMLQVCLVAESPDGEYEMIHQYDEMEEHDIKNVRYDAAEFEPVVED*
Ga0153700_1132317	F002398	AGGA	MMLSLISIFILSSLDPIKNFVSLKTYISENAKKHCQVYFIDENIPDFPRVNLIEKNREAFFEYLDTIGIEHTQVGGYFFIKKK*
Ga0153700_113236	F029440	GGA	MYDLAVKNNKFIHIPPRELKKKDIDWKMRPICDRINASDYCWTVFCCQGHLSGNQKGGLPYLVLLCVNEKRPEVLNKIYSAFEVNEKYDDRFPLMGPRSNMMLISMGLKDEHFTYITLHFNAQGKNDQDYCVEIMDRFSRTI*