Scaffold Ga0153700_11244

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11244
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11069
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1124411	F058142	AGGAG	MAVSTLLVPNAPLVNETQISDVLKRDIPSAWNIPIYSDFPSNSEKVRYGIYVSDVHTNNRNPHQLAVQYCGTIYHAYDEFNVTYISYQDDPYNIQVNAIIANLVVAIKDDGEQLFNGYFQRDFDQVRSYGPTQAEKHTWTFSLLRMEFNT*
Ga0153700_1124412	F002260	AGGA	MSVPYQRISNATVADVQFYDPAAERRAAALDVDWAPYFKVSSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSQLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAQKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF*
Ga0153700_1124413	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPSNTYYTDTPADGFPRVLQLGAMELAESGNALANAVVGFSDNTVLGTIRNIKQNFKVARMPGTPVIILDSNGSAEGTVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLATGKIESVYGCMVMFTTFLQTASRTFLGVASQSVLVGAYFGDSALFTVMKEGLQLKSGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQ*
Ga0153700_1124414	F028717	AGGA	MDQTSSFVGNDQATVTAQDHASGEAGEQNVNPGAIRKSTTQSLLNALSNASGTQFQSVEDALAYMARVGAQNNNGGNVQPVEQPRQQNSSGRVTTNDLHERFNELSQNLARKEQALRERDLDTDIQRAMGDRFDNDLVDYALNKVKSNIQWNDDGSYAIVNQKGQERYGSDGMPLTIQGLVEEVAKGNPKLLRQSHSNSGSGLRPGQGSFTGALDEAIPDYSRDPAAFNAWANKNGLGKGVGLKGLTVSATVQNSSRKVL*
Ga0153700_112443	F101171	GGA	MENIPAVANNKPLVNNAEFVKLTIYNEYGNLANNNVYTFSSSYQSETIDGQVYTPLGGLLAVGVQQRDIRVTSADTSVSLSGIDGNNMYIVLGSLIRGSKLEITRGFYDNTYILTSTAQRFTGIVTNYNISEERQDQDDNFTITLNASSFKSVLENRIAGRKTNSESWKEINPTDTSMDRVPSLSDRAFDFGKPPVQGASTQSQAQTDASQIAQDTNTDTSYTNF*
Ga0153700_112447	F040626	GAG	MALILTIDSLGKRYGMLPSEVLERSNTFDLYIMDASLTFENYHHKKAMNNGVAPAPDYSTDELLAMFNKNKDQ*
Ga0153700_112448	F058146	AGGA	MKLSQLTAKPQLIDVHLDDEDTIKEFGEPIEFWTWDRQPMDVFMKLANASGQDTGGIISVVRTLILDEKGKEVLKDDAMLPTHVLMKAIAKVTELLGK*
Ga0153700_112449	F003807	N/A	MNDEKDIWLHSDEDKLRSLLADEAKMMPMLEAMQSTIRQLKAKQAFRIALLNQLLDKIDTKE*