Scaffold Ga0153700_11237

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11237
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11125
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F015472	Metagenome	254	Y
F018927	Metagenome	232	Y
F027516	Metagenome	194	Y
F033432	Metagenome	177	Y
F048994	Metagenome	147	N
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1123710	F006220	AGG	MKKFKRFVEELAIASGTEMMRASQMRPATFKDKSKYNRKVKHKKVENND*
Ga0153700_1123711	F007310	N/A	MRTVLWNDSERWFNHHHYECLIEDITGFNLQKDLCSETVKYMAKRLRDTPYHRAFRSKYSIYQDEYNKVVEIFNYQANNEGRLIVHNEKVQAFC*
Ga0153700_1123712	F013084	N/A	MGIMNVIGLMAEAKETAIYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEYPLPNEINVGGEAIALTCVKPEKKKREKKP*
Ga0153700_1123713	F010398	AGGAG	MQVTIEGVMKVNYQLTIDEDVFNEACEDAGLDPAKYKTFSKDQWQELNPHLIQAVVDNEDEIDETEIHSQSTIFVDTVTIDDPSNMTTVYYNQDRTFDSVEIM*
Ga0153700_1123715	F008494	AGGAG	MTKQEVINMFMSAVGKYTVAIDATADNNIKYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKISEQTKDLITAKREAEYVLETARANEARIKAEVDQIKYIIRALEVKDEA*
Ga0153700_1123718	F018927	GGA	MEKHIEITRYLSVDGVTTYYVIEKKKNSSGIIWYGTNKQAAYQVAYRSAKKNNSPLYAIQYQSEIDENGAKFIIPVGNERLSN*
Ga0153700_1123723	F057375	AGGAGG	METVDFVNASDFFEAIELGSFESQEFLDQFTYGDSLTDFTLIARTTFLQRLTKFIGECEDIAEKDVMMQSLKEFTFGLLGCIKHVNIEG*
Ga0153700_1123724	F027516	AGGA	MTYASYIAKCEVAKTAFQCNVSAALMTEIATPEQKLGWIAEDLKKLEAELEAIGKAFDEQDEVGDPFAEEAK*
Ga0153700_112373	F015472	AGGAG	MEPRYLNNGGTRWVTADKIRVVGIHNGKTYYKMRKPMYWEAMGNFVRCYVKVGDNVFRGTTYDNNGVIEFDIMKSYRLR*
Ga0153700_112374	F033432	N/A	MIWARHFVSEYRKKFLSLWSAIMAEERWHKFDSQACIPACKGWNAWAPLCECGKNYCTFKPSGNIEDMQMVIEARPLNF*
Ga0153700_112377	F004583	AGGAG	MKYTRNSDRLREILISTRNQIVSLKDIQMDIMRYDNKVANQIATQISALEEVYKHQLSLVNQAESIEPKRNGWFSGHIKTREDRLSNIMD*
Ga0153700_112378	F048994	N/A	MIGTVKFEFGAMSLYVNGVCVATTSTMAGIKHVAKRYNLQGYILATG*