Scaffold Ga0153700_11186

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11186
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11526
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042160	Metagenome	158	Y
F064395	Metagenome	128	Y
F093230	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_111863	F093230	N/A	VREEDGQRVFDIVHGQRWKHVTLTKAEHDNLAKQGSPKLRSYQHGDGTWEYYTYDVSPNILGVVRPDNTFEFTSTSYGQGDRGILSTYGHGELSTNSRMGGMIWTGRLHGNGTRGAYPIYQGMRVNCESMQPTKPITVIGRKVDRKVGKDLLAGYTDFYMTTEVMTKAMDYEVFVRTMNDVVNEHVPSGDFYLDHKEYASVADKLIDTAPLDSAMLYIFAWDIGNMRWNLRRFVDSQMSRYSAHEDTPHTMFLNLKRKLNKEIYKANEKVFKKVEYVNGEMYPPSEWGYTVMVDGVEVKQYD*
Ga0153700_111865	F042160	AGGAG	MMNRYYLDGFGTEEQLNELLASDVLPLVRELQFKYGLKVMGKVMNVGYPQTDKDSYMMCHPNGLAVGKVWTTKVGGANNDQLEYCFRTPFYAKSRGSDQNDRETIRSTKLSSLMAVLKRQDAVRDKKSIMDSKIKMVRNGAHSLRKAMGNSDKQNNFTPDEIHAMLATLLGESTDGIPVALDLNKCKNTLDIYKEADKIRDIKREESKRFFKNPFYLIGIDDYHHLLIGKFKMTVLHSDTSKIEYEVIEDFKRVKTIEEYPELVPLMTMMKVSYENKEMRRIGKLNFPLQDKYDEGLDAVFFYSGSPTNYEQAWMATPCPT*
Ga0153700_111868	F064395	GGA	MNEEDRSNLRDLHAGFALVGLLMNTKGGIVEEVAITAYRFADAMQEARDQHSVGIVSIKRQAKKEKANE*