Scaffold Ga0153700_11144

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11144
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11821
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1114412	F041777	N/A	MKKTLLFIAMLFAGMLIAGTIDESTRQLEQTPNHTTK*
Ga0153700_1114417	F071250	N/A	MKKLISLEKRVEKLLKKYKTLRNNNKALCVRVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNDKDNKKKAQLIKPLLKR*
Ga0153700_1114418	F049635	N/A	MNKQLYSTPFGRLVKINFKTLTNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSREDVFSTFTPTKLINEEND*
Ga0153700_1114427	F019140	N/A	MKQTPLYESLKMTYEREREIVNSIATYFQQGKVLGDILLELSQRKDMNAKEKVYLALMIGSMMSKPNEEK*
Ga0153700_111448	F023350	N/A	LTLEHYIEGHYKKFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGHRMTNEQLDILISRLSEFERLIFQEYILEDFTYRALSKETGIPMPFLYRTIDSIKQKIRANVIRKTQ*