Scaffold Ga0153700_11116

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_11116
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12110
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035227	Metagenome	172	Y
F035278	Metagenome / Metatranscriptome	172	Y
F056337	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1111610	F035278	GGA	MNDKHIKKIIDKQFKIADLDIKYEDICNNQVPNWYQKYTYSPEKNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLKTSTRSIKDNKKK*
Ga0153700_1111615	F035227	AGG	VNDNPSNIHRAVNISTLSDKEIKKYTLVKIGELFEKNDYILLYDDQYVKIGDGNRLLKIKITKENSVYRKK*
Ga0153700_1111620	F056337	N/A	MSDDYNNNSYDAVLSRMEQKLDTISDNINDIKKSHKDLESRVAGLEYFKYYLAGIVAAVTIGANYLMNKVKNG*