Scaffold Ga0153700_10992

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10992
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13159
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F019816	Metagenome	227	Y
F025481	Metagenome	201	Y
F032653	Metagenome	179	N
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_109921	F033030	N/A	MTEKKWSTGGWKKQTAKGEVINFTIENVKYSMWVNAYKTEDKQPDYKIYVNDFNPENKINSKLKEDTEGLPF*
Ga0153700_1099213	F032653	N/A	MRIILLLLLTSCASVKKFEKRYDSTGTTKIDSVHLTFYDSVTKIIEKEQVFTKTITIYDTVRISKDSVIVVPKVVTKWVYETKEKETNNNLTKKDTIALNRTETAQISIVDKNKVTTQNNFWKALITLIIIIALILAYWNRLWK*
Ga0153700_1099215	F010833	N/A	MKYKQLLQLVNNINAVIGSSETKTQKKLVKIFEKVKKHHEDYQAEVEILRLDAAMTDDKDCLLLDDKGNYRYSKDGIKKLTKDIDALNDKEFDFQIINVVNPEGLQDFTFLADWTTGIEFNKQEEEEL*
Ga0153700_109923	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYKDLLTFIEKYSTLLDKPVFLTQINNNDTETTNLEPLAFGQDIDTNPGFNEVQ*
Ga0153700_109927	F025481	N/A	MTHLTTYQKFQFERFGTILLQDGSSTQNPNDPRLLPKNYDYEDDDYTFARWMENNAELELLKNELYED*