Scaffold Ga0153700_10842

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10842
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14541
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F004206	Metagenome / Metatranscriptome	448	Y
F010533	Metagenome / Metatranscriptome	302	Y
F027822	Metagenome	193	N
F034152	Metagenome / Metatranscriptome	175	Y
F051085	Metagenome	144	N
F102858	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1084210	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGVDYDNSGSVVGSEITSQYTLQPGDSLEGQPTEVVKIANALWTTAVVEAYKAAQPKSAE*
Ga0153700_1084215	F010533	N/A	MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYEQQFFAANYDPFQLYSGGMVVYFKTEQKYYQYVGSINSGNPPTTGGPGGTLNAQYWSEALPDYGNNDGNWDAATTYTIGQIVLYPDTQRHYQLFATAPAGTVPTNSVYWGVLNKFLRNISQTNNPDGTPRTVPIGETFSVWPGDPRVSWRQQEATYTFTDDGVLVGDQLPYVWLEFRKTPPLLSSSAEASSYAFPYRFSEICALKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR*
Ga0153700_1084218	F004206	N/A	MGMIPQITDYLLAKVPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDHVVAVLVGWRQMGPEPKAWSWQPNDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPEAAILPAIGYRNGKLTTYKKGSMPIYKAADKKYGIS*
Ga0153700_108422	F102858	GGA	MKLNDEQLSEALSVSEEHPVLKAMGQVIDETLRDEVFNAIMPSLSAEDRAYNAGRAAAIKDLIAQISALRNGRELTSGQF*
Ga0153700_1084220	F051085	N/A	MNYGYQQPGGMMQGYAPQPPMMPGSGYGAPMMTNFQNTTADVEAQRKRLKALGLDDTMIDDALAFKQGLFEKRDEMQGKALEAVGGGLKAAGSGITGAASAAGAGLKGLASSL*
Ga0153700_1084222	F027822	N/A	MTKLGQLYFDAAGGNHNAVVFITAFHAYCHAIDDLVDGDVPFTPEAFMDVLMQANSLYSTPFYIDNWFRLQPVIAQITSTYADSVAWEKADEEWKRQTADVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHA*
Ga0153700_108427	F034152	N/A	MRLGLGLGLGVEQTLGGAGGGADLPIIRRDLLQEDDFFVFLEDGTSKIVITFGTFDSLLLEDASFLLREDTGKLIIQAN*