Scaffold Ga0153700_10831

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10831
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14717
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050992	Metagenome	144	N
F062576	Metagenome	130	N
F066595	Metagenome	126	N
F102810	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1083114	F066595	N/A	MIQLLATTYILAKYIPKPKLLMRKPFTCPLCLTYWSFLIYQIINFTGYFDLLTIPFTFALLASLIEQLNDRYLL*
Ga0153700_1083115	F050992	AGG	MIPQNIAEQLIKWEQMGKNYSPTFNWTELNELAIKSGNKPFNLGCGDCRKQLLEYLLAVIKDGNSK*
Ga0153700_1083122	F062576	AGG	MTITIPNTWHEISIDKFPLIYDIVKDKDIDPIDREIRVISIIADIPVADVEKIRIDQLKELIKSVNFIFQMEFPKAVEMFKHNGYRWIVNYDISKLSAGDFISLAKLTESEESIISNLPQLVAMFVKPYKISWLKYKEIEMDYIQKVEHIKSMNVGIVYPLCVFFCKVIEGLYPSIEDYLVNQMKEARELIQNELNNKNT*
Ga0153700_108315	F102810	N/A	VIDELVKNRIYKQITKNICHNHYLWEDLHFESVLIIIEKQFDLSEIRNLKHFYSAVCWRTWHSNKFKKKYFTDFIQYVDNLNEVIENEEQIDYSTIINFLTYSPQTENEFYEQNLLKLYIQHGGAKKLSDKTKIPYRTVANDIKQIKEKLKRQHNDKNSNQGEHG*