Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10792 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10792 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15191
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (6.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15191

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (6.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019993	Metagenome / Metatranscriptome	226	Y
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F028461	Metagenome	191	N
F088542	Metagenome	109	N
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1079212	F023325	AGTAG	MRLISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNALVGTQYYLQPDEVLDSQNNFLTTIELVDNSTNATAPTVPTTDPLTPGQAAQGYLYICNTKREILATLPLYTLIRRLNAGKPQYLYFDDPVVWQNCFIQFESLGTAITTAHSVWLKVTYSPVEK*
Ga0153700_1079216	F095365	N/A	MEKYLQAAYEYYRQDVKENYLSYEDFKKSLSAACPPCKPGSKLPWWVYLAGGAAVGYAIKK*
Ga0153700_1079219	F019993	N/A	MNKQVKLLLVAGVGYLGFKAYQIYTAISKLSFAPTGINFSIIKERGAIGGTLFVDIINPTAANVNVDGFTGTVTTTSGTLVGDYKGAAMTLKPGVNNVRIAWGSRSTTTLIPLALAIFKGNFPVLKFNTVFNVKGFPIPTSFTMNTKDYAPVLK*
Ga0153700_1079224	F025232	N/A	MENVNEKILADYRLIVSRLDIMKGELTELQRANWKLRKAFNELLDLYQEELDRRDSITDRSDTEYYWCEKAGILD*
Ga0153700_1079230	F028461	N/A	MKKQNAATLFKNPQLQESIIKQYKEAGLDFQVKHSNYNTQIIGQESIIKFIQTEHHTRVFVAYNKIVKDLKASEKTVEILQGEWSTENFDSKNGLKPCKYKSVLNLDITSAYPYCLFINKLITLDTFNYLMKLPKNERLPAIGMIAKKSVWIDYKKGKADTWDVKAGEYANIFFYVIQQITDLMAWAAEIAGDYFLFYWVDGIFLKPSIPKALLEEITGIFAEQGYYYKYENVKDFSVIRDGEKLFINMIKNGEEKPYTMYDKNLARNFTKVLQQLENA*
Ga0153700_1079231	F088542	N/A	MAKKKSAAPKYVDRKYNYPKGYTERGKKKTGFMNSKLGAKLFVEANLEKIQKGTLPFEKLTTREKRIYRGKTSNTLQNTYRFGKDTYYDPTGFIRKRLDNVPALKGKRDLTNLLNKKDFEEYFNQRINPTSGKLKDKERSKWLEFSSSLYDFNKGDKKQFYRDESGSLMDIVTKLQKARKSGREVRVIDTDGSMKTGALAIDRMRSFEADKLKEFTDRAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10792

Overview

Ecosystem & Geography

Associated Families

Sequences