Scaffold Ga0153700_10780

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10780
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15278
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F014237	Metagenome	264	Y
F033321	Metagenome	177	Y
F046323	Metagenome	151	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_107801	F033321	AGGGGG	MSRELEVLREEYKRAIENPIFDDPKDYTILLDLIQDRMEEIEVRYANF*
Ga0153700_1078010	F003658	N/A	MLDLTGTPIFTCICGCKMFVITVMWDEETREVGWYDLKQECKECGAISTAPTPIDWKD*
Ga0153700_1078012	F008237	GGAG	VTLEWARIEPWQYVVDSVASEYHRKFSDIDLEDIRQSLYQWFVEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLSPVLRSEWGQTHKLNLGRPGRPSAPNEGGNMMAMMIEIDFAYWKLVKDDRKLLFLRHAEAMDFPDIAKEMELGSEDAARMRHKRAIRKLINKIGGFKPYSDNDFEQSQQVQQESSEA*
Ga0153700_1078015	F012770	N/A	VEDIEPPHNYCNDCNIEFEDSFQLIDHFLDDDEEFDPYYILPSGFKLMLGSLLRFMFEHAEEPEQIKLISQSTYVTLFASENGYDLVDELVEDTIVKSALVDFDAGLTKLLEEGTNDSEGGA*
Ga0153700_1078018	F079979	GAG	MMIREEEDDMTQEMRAFVLLEVKRETAALVEKIQAAKVPVTDEWTDGLNAGLDWAVRILNKDKSAS*
Ga0153700_1078027	F014237	AGGA	MNTFKNVMMRIGAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLNDGSLTADEINAAFAKVDKKASE*
Ga0153700_107803	F001507	GGAG	MSTTTKPCTVEQLLNEIYEDNYSHLEFEWNMGGEPCECKICYTMQTIIRYRGE*
Ga0153700_107807	F046323	N/A	VYETKGVKVVNVWLPEGTELPADWNTMTYVEKDEWLYENQDEAHLQWSDESEGQAVNVLPVTQLKAVI*