Scaffold Ga0153700_10750

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10750
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15596
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F016784	Metagenome / Metatranscriptome	244	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1075013	F003784	GAG	MDHSGTDFAAYGLSSPEPRQVQRDTGNKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Ga0153700_1075022	F016784	GGA	MEGCLVEFNTFDYVEPEFKNVMATGEYAAHYWFEQGWKACRLAFLLHDQAEKAGAFRV*
Ga0153700_1075024	F001094	AGGAG	VNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKAVEFGRKAK*
Ga0153700_107503	F005558	AGGGGG	MNQESMSWSEIAQLTHATQVENFDWCWCEDNEGNENPYSDCPKEDK*
Ga0153700_107504	F093528	AGGAGG	MSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPEKSVSDVVKEIKEEEGE*
Ga0153700_107508	F095162	GGAG	MENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDAYKELLEKEKVSDEQEGKAWIDLNGTTISPRIVARAKARGITLTQTDTNQGNNGGEG*