Scaffold Ga0153700_10748

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10748
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15607
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F002934	Metagenome / Metatranscriptome	519	Y
F005323	Metagenome / Metatranscriptome	404	N
F007223	Metagenome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1074816	F002934	AGGCGG	MKHPAIVALGAFLAVWGTTSNFALDYRSILGAIVAGVFGYASPKK*
Ga0153700_1074817	F000706	GAG	MTMSDMITLYFASLAVIGGLAGYVITHLLSEIKRLNSRVDEIYNILLER*
Ga0153700_1074820	F007223	AGG	MFDPSFGDVVVMFILAALYFHLGRTVGHRVGYLKGRKAVQAYYDKKERVKV*
Ga0153700_1074823	F005323	GGA	MGRLQFMNQDGEWESFPTEDEIHRSKEVIAILEEFTFMTRCCLCNESIPYKDIKVNLKNKSWSCSKCHAVNGLTKP*