Scaffold Ga0153700_10729

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10729
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15834
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F052474	Metagenome / Metatranscriptome	142	N
F086850	Metagenome / Metatranscriptome	110	Y
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1072911	F026511	N/A	MNTITETQYVGEATMITSNCIAIAFNRPIGSNPVNVNGYPLQEGQTFRVSQNTGDIDRTQYQIYFGSGTGSDECYVFRTLILEGYQNG*
Ga0153700_1072915	F052474	N/A	VNNIIFNIMTDKEKILTAINKLAKLDAQLADNLTKLAKLAEDKPFIYKQAIQQLNSL*
Ga0153700_1072916	F021092	N/A	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKQDSEPITGFGVNPSYPSAGGIIGVEQYLSKHEENATLREKIKGLELEIQYLRDQHGREIDRLRADHEQALKAAKDSNQMFSQGLGMLMQRMGVGE*
Ga0153700_1072917	F023325	AGTAG	MRLISPLLEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNATLGQQYYLQPDEVLDSKNNFITGIELVDSVTNATAPTVPSTDPLSTTQARQGYLYICNLNREVLATLPLYTLIRRLNAGKPTYLYFDEPVVWQNCFIQFESLGTAITTAHSVWLKVTYSPIDK*
Ga0153700_107292	F086850	N/A	MEKKLKFGLGEYNKPTPKKLRRLGDGLLLCSTILTNEVMIEKPAIASIALITGVIGKFLTNFFSAE*
Ga0153700_1072920	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLFLQGQSNTFAKEAGKGMIAQAAGGFIKSKFPTLGITGDAGVDYSAGTMMSGLDTGVDNPMISAVPADDFSAPTTDFTSGSAGEMDY*
Ga0153700_1072922	F095365	N/A	MEKYIQAAYEYYRQDTPSGYMTYEQFKAAICKPKTPWWVYVAGGAAVGYSLKK*
Ga0153700_1072925	F019993	N/A	MKREVKLLLVAGIGYLGFKAYQIYTALKQLSWAPTGINFSIIKERGAIGGTLFVDIINPTAATIKIDGFTGTVTTTSGTLIGDYKGTALVLKPGSNNVRISWGSRATTTLIPLAVGIFKGNWPVLKFNTVMNVKGFPIPTSFTLNTKDYKPTLV*
Ga0153700_1072930	F025232	N/A	MENVNEKILADYRMIVARLDLMKAEVDEVNRNYNKLRKAFVELLEAYQLELDQRDNQFYDRQEVDYYWLDKAGILD*
Ga0153700_107294	F006345	N/A	MDKKTALQIVSEALNIAIAKGCFGLVEVTNIVKALEFLNEQPDVEFGEITHEDIKAAREKEL*