NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10718

Scaffold Ga0153700_10718


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10718 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15948
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049633Metagenome / Metatranscriptome146Y
F051131Metagenome / Metatranscriptome144N
F052593Metagenome / Metatranscriptome142Y
F073556Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1071816F051131AGGAGMNRAFIYSYKTFVSFATYEDVTNRDSRVFEANEDLTEDEINGYLEQASQRILTQIRNTEWWREYQRRMAQITNPNLLPAVNPDYILARTQEFKDLNVYFALFEYVYPTVADFGNPESAEFAKIKFYKDSYNVLFDEVIDAGDWYDFSENNTIDTSDKMATTVNRVRIR*
Ga0153700_1071817F049633GAGMRAELLTYLTAQLTGTIKTSQELPFQEGTNPLYLKNPRRVYLDEPFTEQEEFLPTLGSLSIKQRVTTVRWYLTMDAKNRNTDLDNAITILGSAKDITTITGVWQRQFDYTTTIENDRVIYEGEYRFTNLA*
Ga0153700_1071818F052593AGGAMAFIFPAPGVENVETTLAIRVSGDNSGLLIPAMQDITINNANDVFTWTQLDEESKLQIPTTATNSVDLNIVLDQTSFFGSGTGTDVAINKGIFGLSKDKNLIAFTLYLGDTSTGGAGKTMSGNAYITGLAPTVSADSPVWVSPVTLTVTGNYTVT*
Ga0153700_1071819F073556GGAGGMIFDDKTADEIFRSIEAEVAKGLSELRCARKDLEQAEVRMKFALATIHYLKQRYEDIK*
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