Scaffold Ga0153700_10703

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10703
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16101
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (37.50%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F035215	Metagenome / Metatranscriptome	172	N
F048090	Metagenome / Metatranscriptome	148	N
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1070312	F020860	AGTAG	MEITKAKKLKEGGYALYAVDPKTKTETQVGYIGEELPLDGYLPKGLKIENS*
Ga0153700_1070313	F016115	AGGA	MVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCTSREDADKRFIQLKEKLSAYVATATLANGEKRGRGRPRKIDLTKTESVVV*
Ga0153700_1070314	F010746	AGTAG	MTYKCSVSGEALSPERVEALQVLGVPEALWTKKEHSQTRKLKAVYAGDDGSNDIVICDNVDGGSMFDNSVVAEVENE*
Ga0153700_1070318	F007359	AGGA	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKAVAMNRIKNTIDNIPTENFVHTAQVEDIYSLGTISAEKLDTDS*
Ga0153700_1070326	F014486	GGA	MKIEKLLNENLESFYPWSDSDNPPLDTNKSFLEKQKEIDEVFEGWRASM*
Ga0153700_1070329	F048090	N/A	MTNQITSLATETCEEAYVDANAFFDYINSNDAVNAMLDALSGVYDSNETLVEVK*
Ga0153700_1070330	F024954	N/A	MKDKEMKNTIESLVVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNESSKYKGD*
Ga0153700_1070331	F086551	N/A	MKMKERINKMNIQINPELYENKNIYRYGHEKLLVKLFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGMYPVDAQ*
Ga0153700_1070335	F024058	N/A	MRENMRKNMTASEEVIITNSRNTPTYFGEIYLYEGTLVKVSYRTTAGNAVVTFLEGKDKDKVGTINLNNAKLVKENK*
Ga0153700_107035	F025679	N/A	MTKTFKIGETALGGTIKVVIPKTLTNIRIDVISTNHITRDSCDAPYLMNQYIYYSFDRIRIERDLFQIVSGYWSDEILKWIHKNWHAQLAKI*
Ga0153700_107037	F035215	AGGAGG	MKSSEQIAKEINDRIAEYKGLMVEHDNNQDAVHELESAIHELDHLLRWINE*
Ga0153700_107039	F010897	N/A	MPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYIRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQYKKNKFYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNIKFNLV*