Scaffold Ga0153700_10506

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10506
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19144
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.60%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F012014	Metagenome / Metatranscriptome	284	Y
F014839	Metagenome	259	Y
F021096	Metagenome / Metatranscriptome	220	N
F031033	Metagenome	183	Y
F040589	Metagenome / Metatranscriptome	161	Y
F053984	Metagenome / Metatranscriptome	140	N
F057210	Metagenome / Metatranscriptome	136	N
F062696	Metagenome	130	N
F064517	Metagenome / Metatranscriptome	128	N
F082389	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1050613	F053984	N/A	MENQIPTPTENAAVAVAGQITNFAELVAKSTELAKMEQVLTLTAEYIELEKPAESFRGIYFGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAAVTIGTPVEITYLRKEGNTKIYQVTLLG*
Ga0153700_1050616	F031033	N/A	MAKNVRIELTADELKLIRDTCPNDFMNLIIANEWMKGMYTNDWEQNERLQIVRLFFNKRRPAAPSEIKADKLGQTKLL*
Ga0153700_1050623	F082389	N/A	MAIVKRKNVSGGTYYFNTTTKKFASEAAYKKSKSAPISKFKARKGKPSEGTCSAYGAELKVKRTSAAGRGLRKCR*
Ga0153700_1050624	F014839	N/A	MKLEVENKELFSRYHKLRRAFNELLEVHDNLRERSGLDYSDKYDWCEKAGLLDDVE*
Ga0153700_1050629	F012014	N/A	MNLLSKEVLIGAASLGAGAVAAKVVQNKVVPMVLPTASENVKNLITLGIGIFTPTIVKGSVGTGLGAGMIATSVAGLVDPFLKSAGITGYGEGYMGDVLMGEDISAGAPLMGAVDTFTAPANDFTEGGAGEMDF*
Ga0153700_1050632	F021096	GGAGG	MAALISPIINYFLKNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQAYYFASQTMLDGQNCTITALEIVPSTELVTLPTGQTNVDSSILPNGVLYVSNLKRQVIAQIPLSTLVRTNNGGKPTYVWFNDQVWQNCYVEFTSTGFTTTTTPLTFRVYYVNKQKN*
Ga0153700_1050634	F040589	N/A	MSIAQTAILATALRPRSSEGAAKAKPTSISESIAQKPIQWLVVGGAVLYFGSKAIGKYITTAAERKKEEAETTTSTDNPWSASAFLGQKIPVGTPLLTAAKAYTEATKVFNALDTYFVDDADIVVGVFAALPSQVQVAQVVKSFEAYYKRNILEYLKSGKKTFDFGTGGISSELYNRIIENVRRKPKF*
Ga0153700_1050636	F064517	N/A	MARTRTENLYYGKSQQIEADGCFAISFFRPSTSNPVQVNGIPLEAGQTLSIKQNVGDEDWSTYEIVFYTGTSTNEMHVTKIMPIK*
Ga0153700_1050639	F062696	N/A	MKTYGTIRIFCICIVGIYLNSCSPQYRLQRLLKNHQYLYENFRYDSIRIQDAVVQDSLFFFTKEKDTLYFNNATIYRNADTLRLVQSCPPCTTTITKQILQPTEKYFKEKRYERSFRQKLEDAIFPFVIGMLVCALIIKK*
Ga0153700_1050641	F006345	N/A	MKTEQALQILKEALNIAIAKGCFGLIETTNIVKALEHFDNQPSIEFGEITED*
Ga0153700_105065	F057210	N/A	MNTTDQQINQIMTAISEIVANTENTENLTKMDKLTQDSAKILVKELHLCILRHTYRIDNIRHNYDTMEELL*