Scaffold Ga0153700_10484

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10484
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19677
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F040626	Metagenome	161	Y
F058146	Metagenome	135	Y
F065543	Metagenome / Metatranscriptome	127	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1048410	F101171	AGGAG	MEPIPAVQNKTNINSAEFVKLTIYNDVNNPGDVSVYTFSSSYKEEEIEGQIYSPMGGLLAVGIQQRDIRVTSADTSLSLSGINGDNIYVVLANKIRGSKLEITRGFYDDQYILTSAVPRFTGIITSYNISEERHDLVDNYTVSINASSFRYVLENRIAGRKTNKESWQSFFPNDGSLNNLYSISDQQFDFGMAVTKQVATGSTASVDASQTGTNQARNEQP*
Ga0153700_1048414	F040626	N/A	MALILTIDSLGKRYGMLPSEVLLRSNTFDLYIMDASLSFENYHHQKSMNKGNEPMPDYNTDELLEMMNRAKGQ*
Ga0153700_1048415	F058146	AGGA	MKLSQLTAKPQLIEVTLDDESIVKEFGEAITFYTWDRQPMDIFMKLASATTSDTMNIINIVRTLILDEKGKEILTDEAMLPTHVLMKAISKVTELLGK*
Ga0153700_1048416	F003807	AGGA	MNEYLKTSEEKLRSLLADEAKQMPMLDNMQATLRQLKAKQAFRIALLNQLLEDVDEKE*
Ga0153700_1048419	F002260	AGGA	MSVPYQRISNATAQDIAFYDPAAERRAAALGIDWAPYFKVASQEWLYKLEFGWWNKYCDTVLGAYYYSNLPNGALISSFNPGQLMKNDQTLIRLDTFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYDLYQNAPNGPATKLEENWTADVDYFNGDRRFF*
Ga0153700_1048420	F011761	AGGA	MAYVLGGDSGEGYGFTFAIANFALRAMHESNGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAADPATAPWGTGNATVQNPALTQTTVTASPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTAAMAGFKATPGNTFYATSADGFNRILQLGAIELLPSGSTATGTAGFTANLVTEAIRLIKQQFKIARMPGNPVVVIDSNGNDGVIGSTLTRLLSELTGGAVSQQGGANLSALGNELLASGKIDNIYGCMVMSTTFLTSASRTVAGTAATPVLVGGYFGDSALFTVMKQGLEIKLGEVPGGLQNWLTGVGYFGSGVGDLRRGGAINIVQD*
Ga0153700_1048421	F065543	N/A	NNQGRVTTNDLHERFNELQQNLAQKEQRLREKELDSDIQRAMGDKFDPDMIDYALQKVKNNIQWSNDGTYVITNSKGQERYGMDGSPLTIQGLVQEVASGNPKLLKQSNTNSGSGLRPGQGNFAGAPQDGVPDYSKDPAAFNAWAQRNGLGRNMGLKGTTVSATQSTSSQRIL*