Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10467 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10467 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19937
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (43.75%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19937

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (43.75%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F089880	Metagenome	108	N
F090571	Metagenome	108	N
F094938	Metagenome	105	N
F097609	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_104672	F094938	N/A	MKDKPTPTQEPEVKTPAVDSALKREIYLRLISASAADGKFDLGKLPNAQAVVKQGDHLRGVAELLTQCLK*
Ga0153700_1046729	F090571	AGGAGG	MSTDKAYGKASRYMDAALQIWESQDKERYCIAENYWNEGMKIYNEHFIQINVLTELQDIDSLLP*
Ga0153700_104674	F097609	N/A	MSNQLEGLEPKDIIKKVTGTITKLFPEKQHEGNFGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASAKVEYDGVSDEPVRVSPKTIVTDNPTEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEKPEPSKVEEPKEVSPADWASAIVPSGSQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVETDDIPY*
Ga0153700_104675	F089880	N/A	MKKELELFSPTQEGILVPVATYLRHMAEFVKSEWPGFAITENHIKKAWAKLQKNEYLDDGTPDEMLEMYEKMSADWDMALELEEERINIANQPVEEQVNESLALIDSVKDGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAEKRDASLPFTVYREIGNANFGDAKTNAKKQQDMLEVAKVEQLSSAEVRNRVRNEQGKDDKSVAPHRYLVLNVGNYGNSEVKRSVPEKLEAHHFLIDRQDMSWFDAAQGEWVKFAKEQ*
Ga0153700_104676	F015061	AGGA	MSEKNQQNETSKTILEAFSFIKCEDEKLNERVHAFASLLHTAAMMVVKSESRKGEGFECIKYLELAFLYYKESQFRKRFDTEEKEEAPRIIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10467

Overview

Ecosystem & Geography

Associated Families

Sequences