Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10424 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10424 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20909
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (20.83%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20909

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (20.83%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F026511	Metagenome / Metatranscriptome	197	N
F052474	Metagenome / Metatranscriptome	142	N
F086850	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1042410	F026511	N/A	MNTTTDCQTIGEATMITSDCIAIAFKRPTGSNPVNVIGYPIAEGETLTISQNVGDIDRTQYAIFFGSGAGSNVLHVFRTLILD*
Ga0153700_1042414	F052474	N/A	VNNTILNIMSDKEKILTAINKLAKLDANLAENLSKLAELAERNKFIYDQAVKQLKSL*
Ga0153700_1042415	F021092	N/A	MTDPHYILEFMQDNDLRYFQIANTHNRDVVTSFNDRSLEEGVDKMKKFLTKNTGFHRIKLFTNNEMRANGIPKQEPQIFEVSITGKEFDPVKEEKEISGFGMSPYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYLREQHQREIDRLRADQEIALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0153700_1042416	F023325	N/A	MRLISPLIEYLTVSKKLKQVGSYEGSFTKSVYMPFFENATVGNSYYMQPDEVLDSINNDITAIELVDSVTNATAPTVPATDPISATQATQGYFYFCNLQREIVAYIPLNVLIRRLNAGKVTLTNFDEPIVWQNCFVQFDSLTNAITTSNSVWLRVSYAPKEN*
Ga0153700_1042419	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGMTGKLVADLAPIVVGLALQGQSNLFAKEAGKGMIAQAAGSFIKSKVPALGITGDGYSDNVMMSGTLDTGVDNPMISAVPSDYLSDDTAGDAGEMDY*
Ga0153700_104242	F086850	N/A	MEKKSLKFGLSEYSKPTPRKLRRLGDGLLLASSLITNELMVVNPTVASISLICGTIGKFLTNFFSEA*
Ga0153700_104244	F006345	N/A	MNNKTAKQIVNEALNIAIAKGCFGLVEVTNIVKALEFLNDQPDVEFGEISHQEANEIRETKLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10424

Overview

Ecosystem & Geography

Associated Families

Sequences