Scaffold Ga0153700_10412

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10412
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21362
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1041214	F054875	AGGA	MTKLSSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLVAESDAIYKKVSEPDEETVAKVYQEITAPLRQFENNQTEGFQFTDDDILVEGRSMREAAKNKAITEARITEFFKLLVPEMEGVSLEDLTYADIEEEFPIAVQMLIVEKIGEVISPTYREARGN*
Ga0153700_1041215	F043944	N/A	MIFNGHTLETIEELDDVTLANIQTMYADGLVGNFGILTQLATLTNGVFNYMRTANSPPYKLANILGSAYDYIYPPLTAEQQKAAVNDSLLAFMSQANGFDKTKFGVKDG*
Ga0153700_1041218	F014737	GAG	MTTINAVTGSQINHAEFVRLTVGNIGTVYTFCNAAAPITVSGITFSNLGALLNVGDVQRDIKATSDDMTIALTGIDPANIGIILGNEIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNIEARTRIATCSISCSSMRRILENRLSGVKTNQSNWQFIYPNDTSMNRVSEISNTYFDFGAPPQRQTQSSETTVTTTSSSVETNF*
Ga0153700_1041219	F023109	AGTAG	MIRLATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFGIIQGRGFIYVDSHLRGAIVACKTSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERANAMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0153700_104122	F092064	N/A	MKKAPKQIIGFLRNPSTWNADAFETAIRNEVENSTGALTASDELLVGSLVLVVDTLVQAHIGLLENGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKVSEVDELFATA*
Ga0153700_1041222	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVYNQNTYWNLTFTNSNTNLPIDLTGATINAQIVRRQVSNIIDTRNGLTFDIADYTPTPTAIPLTVTNIVAASGTCTLVIDSATWGLISTDAQLEINASDCVGYSGRVKVSFPAVGSTPADDQVIFLLFLVRSDGIVVV*
Ga0153700_104129	F002997	N/A	MAIARFEQITVNNLAFAKSDFGEQSTAQTVWFRTRARVHSVANSLKISEKYRLYQDVVSFILNYTPNTRTMVRNQNLYSISYNGYDWRIDNIRESDDRMTVVILAYRNDPVTAV*